{ "_id": "6a48b2e9e06c18f0a65472d5", "Package": "clusterGGM", "Type": "Package", "Title": "Sparse Gaussian Graphical Modeling with Variable Clustering", "Version": "0.1.1", "Date": "2025-10-21", "Description": "Perform sparse estimation of a Gaussian graphical model\n(GGM) with node aggregation through variable clustering.\nCurrently, the package implements the clusterpath estimator of\nthe Gaussian graphical model (CGGM) (Touw, Alfons, Groenen &\nWilms, 2025; ).", "License": "GPL (>= 3)", "URL": "https://github.com/aalfons/clusterGGM", "BugReports": "https://github.com/aalfons/clusterGGM/issues", "Authors@R": "c(person(\"Daniel J.W.\", \"Touw\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3074-5401\")),\nperson(\"Andreas\", \"Alfons\",\nemail = \"alfons@ese.eur.nl\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-2513-3788\")),\nperson(\"Ines\", \"Wilms\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3269-4601\")),\nperson(\"Patrick J.F.\", \"Groenen\", role = \"ths\",\ncomment = c(ORCID = \"0000-0001-6683-8971\",\n\"PhD advisor of Daniel J.W. Touw\")))", "Author": "Daniel J.W. Touw [aut] (ORCID:\n), Andreas Alfons [aut,\ncre] (ORCID: ), Ines\nWilms [aut] (ORCID: ),\nPatrick J.F. Groenen [ths] (ORCID:\n, PhD advisor of Daniel\nJ.W. Touw)", "Maintainer": "Andreas Alfons ", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "Repository": "https://aalfons.r-universe.dev", "Date/Publication": "2025-12-06 21:49:48 UTC", "RemoteUrl": "https://github.com/aalfons/clusterggm", "RemoteRef": "HEAD", "RemoteSha": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-04 06:31:39 UTC", "User": "root" }, "_user": "aalfons", "_type": "src", "_file": "clusterGGM_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/7a970f657c7d437c6e354dda1fe16115513fa3ba19b86bed2c71a741e708b030", "_filesize": 202923, "_sha256": "7a970f657c7d437c6e354dda1fe16115513fa3ba19b86bed2c71a741e708b030", "_expires": "2026-10-12T07:14:47.000Z", "_created": "2026-07-04T06:31:39.000Z", "_published": "2026-07-04T07:14:49.595Z", "_jobs": [ { "job": 85110515296, "time": 171, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "8079186764" }, { "job": 85110515314, "time": 153, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8079184249" }, { "job": 85110515307, "time": 168, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8079186398" }, { "job": 85110515301, "time": 156, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8079184633" }, { "job": 85110515304, "time": 123, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8079486305" }, { "job": 85110515306, "time": 323, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "8079206547" }, { "job": 85110515300, "time": 136, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8079458029" }, { "job": 85110515310, "time": 217, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8079194983" }, { "job": 85110223200, "time": 232, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8079164645" }, { "job": 85110515295, "time": 170, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8079186418" }, { "job": 85110515292, "time": 166, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8079185688" }, { "job": 85110515293, "time": 165, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8079185684" }, { "job": 85110515289, "time": 161, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8079185242" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026", "_status": "success", "_upstream": "https://github.com/aalfons/clusterggm", "_commit": { "id": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "author": "djwtouw <75936485+djwtouw@users.noreply.github.com>", "committer": "djwtouw <75936485+djwtouw@users.noreply.github.com>", "message": "Update utils.cpp\n", "time": 1765057788 }, "_maintainer": { "name": "Andreas Alfons", "email": "alfons@ese.eur.nl", "login": "aalfons", "orcid": "0000-0002-2513-3788", "description": "", "uuid": 977208 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.9", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "mvtnorm", "role": "Suggests" } ], "_owner": "aalfons", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-37", "n": 14 }, { "week": "2025-39", "n": 7 }, { "week": "2025-41", "n": 1 }, { "week": "2025-42", "n": 13 }, { "week": "2025-43", "n": 5 }, { "week": "2025-49", "n": 1 } ], "_tags": [ { "name": "v0.1.0", "date": "2025-10-13" }, { "name": "v0.1.1", "date": "2025-10-21" } ], "_stars": 0, "_contributors": [ { "user": "djwtouw", "count": 117, "uuid": 75936485 }, { "user": "aalfons", "count": 53, "uuid": 977208 }, { "user": "ineswilms", "count": 11, "uuid": 31667271 } ], "_userbio": { "uuid": 977208, "type": "user", "name": "Andreas Alfons", "followers": 30 }, "_downloads": { "count": 294, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/clusterGGM" }, "_devurl": "https://github.com/aalfons/clusterggm", "_searchresults": 0, "_topics": [ "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/clusterGGM.html", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/aalfons/clusterggm", "_realowner": "aalfons", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2025-10-17" }, { "version": "0.1.1", "date": "2025-10-22" } ], "_exports": [ "cggm", "cggm_cv", "cggm_refit", "clusterpath_weights", "cv_folds", "get_clusters", "get_Theta", "lasso_weights", "min_clusters" ], "_help": [ { "page": "clusterGGM-package", "title": "Sparse Gaussian Graphical Modeling with Variable Clustering", "topics": [ "clusterGGM-package", "clusterGGM" ] }, { "page": "cggm", "title": "Clusterpath Estimator of the Gaussian Graphical Model", "topics": [ "cggm" ] }, { "page": "cggm_cv", "title": "Cross Validation for the Clusterpath Estimator of the Gaussian Graphical Model", "topics": [ "cggm_cv" ] }, { "page": "cggm_refit", "title": "Refit the Gaussian Graphical Model for a Given Aggregation and Sparsity Structure", "topics": [ "cggm_refit" ] }, { "page": "clusterpath_weights", "title": "Compute the Weight Matrix for the Clusterpath Penalty", "topics": [ "clusterpath_weights" ] }, { "page": "cv_folds", "title": "Create Cross-Validation Folds", "topics": [ "cv_folds" ] }, { "page": "get_clusters", "title": "Extract the Cluster Assignment", "topics": [ "get_clusters", "get_clusters.CGGM", "get_clusters.CGGM_CV", "get_clusters.CGGM_refit" ] }, { "page": "get_Theta", "title": "Extract the Estimated Precision Matrix", "topics": [ "get_Theta", "get_Theta.CGGM", "get_Theta.CGGM_CV", "get_Theta.CGGM_refit" ] }, { "page": "lasso_weights", "title": "Compute the Weight Matrix for the Lasso Penalty", "topics": [ "lasso_weights" ] }, { "page": "min_clusters", "title": "Calculate the Minimum Number of Clusters", "topics": [ "min_clusters" ] } ], "_readme": "https://github.com/aalfons/clusterggm/raw/HEAD/README.md", "_rundeps": [ "cli", "dplyr", "generics", "glue", "lifecycle", "magrittr", "pillar", "pkgconfig", "R6", "Rcpp", "RcppEigen", "rlang", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 3.7781512503836434, "_indexed": true, "_nocasepkg": "clusterggm", "_universes": [ "aalfons" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-07-04T06:34:31.000Z", "distro": "resolute", "arch": "aarch64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/8a7b419281e68d9208bd5fd70ee085b6045fee15e2defd6ba7aac848b7c8c02c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-07-04T06:34:06.000Z", "distro": "resolute", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/f980002842b47bdb29ab333367841b46f34041e53cbf27c05aa6dd9486d36fcc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1", "date": "2026-07-04T06:34:28.000Z", "distro": "resolute", "arch": "aarch64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/d5bad92028ad0ac7b204a8cdbb5107996cab9c486942d1a3609dab1426c4fb3a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1", "date": "2026-07-04T06:34:10.000Z", "distro": "resolute", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/f15426d67866124be2420018f0d5716e372009ad1cc742556c402fb49a51a843", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-07-04T07:13:46.000Z", "arch": "aarch64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/c6d6f7603607563fec109d56d9bded27ef8c0d9519ef46085adac612235adce4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-07-04T06:36:02.000Z", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/341c773a81382553cd5e456a19c9be5d60418cba8983f7432354dd735c173fa7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1", "date": "2026-07-04T07:10:09.000Z", "arch": "aarch64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/0c60ddd47c763f4550ec1b2b17b0d41cd472eda72816977f879e377c65838482", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1", "date": "2026-07-04T06:34:52.000Z", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/260334bde27e643d48c9358dd27ba776e51249290935eb40b2582991eacfe8e6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-07-04T06:34:37.000Z", "arch": "emscripten", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/894967b0d3aff9b6b204d5b2ed94cbb6a80cab22fa53af6c5a128f796c4c069e", "status": "success", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-07-04T06:33:21.000Z", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/2497cda75de20ff7d72573959c40643d8e6422981a4dba395c3a8b22ea889df3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-07-04T06:33:29.000Z", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/ea0402e1590b4fca35fe5b2389332319b34901dd37a4db4398354c933c7e8340", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" }, { "r": "4.6.1", "os": "win", "version": "0.1.1", "date": "2026-07-04T06:33:25.000Z", "arch": "x86_64", "commit": "3fd96d778b97404ef027633aef8b1f9b31efe95e", "fileid": "https://r2.ropensci.org/86cb1d04ca892b2f557bc80c60ca8ba982f17f57954b20693fca8cfd999cafdd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aalfons/actions/runs/28697718026" } ] }